Mapping QC
Column
Global mapping stat
| Total_Pairs | 174732758 | 100% |
| Total_Uniq_Mapped | 161994585 | 92.7% |
| Total_Pairs_Mapped | 171934385 | 98.4% |
| Total_Mito | 4403392 | 2.5% |
| Total_Mito_Mapped | 4383154 | 2.5% |
| Total_Dups | 54041122 | 30.9% |
| Total_Pairs_MAPQ30 | 157385805 | 90.1% |
| Total_Mito_MAPQ30 | 3493930 | 2% |
| Total_Dups_MAPQ30 | 49368041 | 28.3% |
Column
Mapping stat for cell barcodes
| Estimated # of cells | 4047 |
| Fraction of MAPQ30 in cells | 73.6% |
| Library Complexity (non redudant fraction) | 72.5% |
Cell barcodes QC
Row
TSS enrichment score profile
Overlapping with functional annotation
Overlapping stats
| Fraction in peaks | 64.1% |
| Fraction in mitocondrial chromosome | 1.4% |
| Fraction in promoters | 34.1% |
| Fraction in Enhancers(ENCODE) | 26.2% |
| Fraction in TSS | 30.8% |
Row
Disctribution of fragments
Total fragments VS franction in peak
Insersion Size distribution
Downstream Analysis
Column
Clustering (Louvain algrithm implemented by Seurat)
Read depth Plot
Column
Motif Analysis
