Mapping QC

Column

Global mapping stat

Total_Pairs 174732758 100%
Total_Uniq_Mapped 161994585 92.7%
Total_Pairs_Mapped 171934385 98.4%
Total_Mito 4403392 2.5%
Total_Mito_Mapped 4383154 2.5%
Total_Dups 54041122 30.9%
Total_Pairs_MAPQ30 157385805 90.1%
Total_Mito_MAPQ30 3493930 2%
Total_Dups_MAPQ30 49368041 28.3%

Column

Mapping stat for cell barcodes

Estimated # of cells 4047
Fraction of MAPQ30 in cells 73.6%
Library Complexity (non redudant fraction) 72.5%

Cell barcodes QC

Row

TSS enrichment score profile

Overlapping with functional annotation

Overlapping stats

Fraction in peaks 64.1%
Fraction in mitocondrial chromosome 1.4%
Fraction in promoters 34.1%
Fraction in Enhancers(ENCODE) 26.2%
Fraction in TSS 30.8%

Row

Disctribution of fragments

Total fragments VS franction in peak

Insersion Size distribution

Downstream Analysis

Column

Clustering (Louvain algrithm implemented by Seurat)

Read depth Plot

Column

Motif Analysis